<html>
<h3>Gene Table</h3>
<h4>Top row of buttons</h4>
<table border=0>
<tr><td><i>Button</i><td><i>Description</i>
<tr><td>Libs<td>Show the table of library counts for the selected gene(s).
<tr><td>Variants<td>Show the table of variants for the selected gene(s).
<tr><td>Trans<td>Show the table of transcripts for the selected gene(s).

<tr><td>Draw<td>Draw the selected gene with its transcripts and variants.
<tr><td>Copy Gene<td>Copy the gene name from the selected row so that it can be pasted.
<tr><td>Export Table<td>Export the content of the table to a file, where the order of
the columns and rows are maintained.
</table>

<h4>Column Descriptions</h4>
<i>Basic Selection</i>
<br>The following table only explains the non-obvious columns.
Some data is optional, so may not be available.
<table border=0>
<tr><td><i>Column name</i><td><i>Description</i>
<tr><td  valign="top">GENEid<td>mySQL identifier, used internally
<tr><td valign="top">Gene<td>Gene name
<tr><td valign="top">Ident<td>Alternative identifier, e.g. Ensembl
<tr><td valign="top">Descript<td>Description, e.g. from NCBI
<tr><td valign="top">Synonyms<td>Alternatives names
<tr><td valign="top">#UniqExon<td>Number of unique exons from the transcripts for this gene
<tr><td valign="top">#Libs<td>Number of libraries that have read coverage of at least 1.
<tr><td valign="top">#LibAI<td>Number of libraries that have AI p-value&lt;0.05.
<tr><td valign="top">#SNPCov<td> Number of SNPs with at least one library with Ref+Alt&gt;=20.
<tr><td valign="top">#Mis<td>Number of missense SNPs

</table>

<p><i>Library Group Selection</i>
<ul type="circle">
<li>Select at least one option from each row, then select "Apply Selection".
<li>Ratio=Ref:Alt, Score=Ref/(Ref+Alt), Pval=p-value
</ul>

<p><i>Library Ref:Alt Selection</i>
<ul type="circle">
<li>Individually select libraries for Ratio, Score and/or Pvalue.
</ul>
<h4>Manipulating the table</h4>
<ol>
<li>Columns can be moved around by selecting a column heading and moving it.
<li>Columns can be sorted by right click (descending); left click or second right click (ascending).
<li>To change the columns shown, select "Select" (next to the "Columns" label at the bottom of the window). 
<br>Selecting/deselecting a column immediately displays or removes it.
<li>When a new table is generated, it uses the last selected column settings. 
</ol>
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